JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFNLR1_chr1_24149168_24192289	0/0	c0014	1563	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0015	1563	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0016	1563	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0017	1563	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0018	1563	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	c0019	1563	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNW1_chr9_21135632_21146832	1/1	c0001	588	453	99	86	200	18	48	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	c0002	588	21	0	0	20	0	1	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	c0003	588	3	0	0	3	0	0	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	c0004	588	1	0	0	1	0	0	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	c0005	588	1	0	0	0	0	1	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	c0006	588	1	1	0	0	0	0	copy fasta	IFNW1	chr9	21135632	21146832
IFRD1_chr7_112445460_112482203	1/1	c0001	1356	258	58	56	101	8	33	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0002	1356	77	27	9	29	7	5	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0003	1356	19	0	3	11	0	5	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0004	1356	9	3	4	0	1	1	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0005	1356	5	4	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0006	1356	2	2	0	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0007	1356	2	0	0	2	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0008	1356	1	0	0	1	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	c0009	1356	1	0	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD2_chr3_50282732_50297429	1/1	c0001	1329	231	55	51	78	15	30	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0002	1329	78	0	12	65	0	1	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0003	1329	16	14	2	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0004	1329	12	0	2	9	0	1	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0005	1329	8	8	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0006	1329	4	4	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0007	1329	3	3	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0008	1329	3	3	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0009	1329	2	0	0	0	0	2	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0010	1329	1	0	0	1	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0011	1329	1	0	0	0	1	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0012	1329	1	1	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0013	1329	1	0	1	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0014	1329	1	0	0	1	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0015	1329	1	1	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	c0016	1329	1	1	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFT122_chr3_129435224_129525507	1/0	c0001	3726	282	67	48	125	7	34	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/1	c0002	3726	30	9	5	8	2	5	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0003	3726	6	6	0	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0004	3726	6	3	2	0	1	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0005	3726	5	0	0	5	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0006	3726	3	0	0	2	0	1	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0007	3726	3	1	2	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0008	3726	3	0	0	3	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0009	3726	2	2	0	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0010	3726	1	0	1	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0011	3726	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0012	3726	1	1	0	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0013	3726	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507