JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFT122_chr3_129435224_129525507	0/0	c0014	3726	1	0	1	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0015	3726	1	1	0	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0016	3726	1	1	0	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0017	3726	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0018	3726	1	0	0	0	0	1	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0019	3726	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0020	3726	1	1	0	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0021	3726	1	0	0	0	0	1	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0022	3726	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0023	3726	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0024	3726	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	c0025	3726	1	0	1	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT140_chr16_1505427_1617072	1/1	c0001	4389	103	20	19	40	5	17	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0002	4389	64	23	7	20	1	13	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0003	4389	29	0	7	19	1	2	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0004	4389	21	9	2	9	0	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0005	4389	18	3	1	9	2	3	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0006	4389	7	0	7	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0007	4389	6	6	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0008	4389	5	0	0	5	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0009	4389	5	4	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0010	4389	5	0	0	5	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0011	4389	4	0	3	0	1	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0012	4389	4	4	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0013	4389	4	3	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0014	4389	3	0	0	3	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0015	4389	2	2	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0016	4389	2	2	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0017	4389	2	1	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0018	4389	2	0	0	1	0	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0019	4389	2	2	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0020	4389	2	0	2	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0021	4389	2	0	0	2	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0022	4389	2	0	2	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0023	4389	2	0	0	2	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0024	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0025	4389	1	0	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0026	4389	1	0	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0027	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0028	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0029	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0030	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0031	4389	1	0	0	0	0	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0032	4389	1	0	0	0	0	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0033	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0034	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0035	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0036	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0037	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0038	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072