JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFT140_chr16_1505427_1617072	0/0	c0039	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0040	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0041	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0042	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0043	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0044	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0045	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0046	4389	1	0	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0047	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0048	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0049	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0050	4389	1	0	0	0	0	1	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0051	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0052	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0053	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0054	4389	1	0	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0055	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0056	4389	1	0	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0057	4389	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0058	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0059	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0060	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	c0061	4389	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT172_chr2_27439377_27494743	1/0	c0001	5250	124	50	26	29	5	13	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/1	c0002	5250	81	19	25	21	5	10	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0003	5250	2	2	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0004	5250	2	2	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0005	5250	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0006	5250	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0007	5250	1	0	0	1	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0008	5250	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0009	5250	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0010	5250	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0011	5250	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0012	5250	1	0	1	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0013	5250	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0014	5250	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0015	5250	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0016	5250	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0017	5250	1	0	0	1	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0018	5250	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	c0019	5250	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT20_chr17_28323326_28340472	1/1	c0001	399	355	85	68	145	14	41	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	c0002	399	3	0	0	0	0	3	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	c0003	399	1	1	0	0	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	c0004	399	1	0	0	1	0	0	copy fasta	IFT20	chr17	28323326	28340472
IFT22_chr7_101305914_101326812	1/1	c0001	558	409	94	64	194	16	39	copy fasta	IFT22	chr7	101305914	101326812
IFT22_chr7_101305914_101326812	0/0	c0002	558	1	0	0	0	0	1	copy fasta	IFT22	chr7	101305914	101326812
IFT25_chr1_53916561_53950699	1/1	c0001	435	280	94	37	109	12	26	copy fasta	IFT25	chr1	53916561	53950699
IFT25_chr1_53916561_53950699	0/0	c0002	435	1	0	1	0	0	0	copy fasta	IFT25	chr1	53916561	53950699