JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFT25_chr1_53916561_53950699	0/0	c0003	435	1	0	0	1	0	0	copy fasta	IFT25	chr1	53916561	53950699
IFT27_chr22_36753211_36781119	1/1	c0001	561	286	81	69	89	12	33	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	c0002	561	6	6	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	c0003	561	2	2	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	c0004	561	1	0	1	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	c0005	561	1	1	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	c0006	561	1	0	0	1	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	c0007	561	1	0	0	0	0	1	copy fasta	IFT27	chr22	36753211	36781119
IFT43_chr14_75980763_76088742	1/1	c0001	627	388	92	76	165	12	41	copy fasta	IFT43	chr14	75980763	76088742
IFT43_chr14_75980763_76088742	0/0	c0002	627	4	0	0	4	0	0	copy fasta	IFT43	chr14	75980763	76088742
IFT43_chr14_75980763_76088742	0/0	c0003	627	3	0	0	3	0	0	copy fasta	IFT43	chr14	75980763	76088742
IFT43_chr14_75980763_76088742	0/0	c0004	627	1	0	0	0	0	1	copy fasta	IFT43	chr14	75980763	76088742
IFT46_chr11_118539543_118570931	1/1	c0001	915	264	68	60	99	9	26	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	c0002	915	106	14	3	73	1	15	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	c0003	912	5	3	2	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	c0004	915	1	0	0	1	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	c0005	915	1	0	0	0	0	1	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	c0006	915	1	1	0	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	c0007	915	1	0	1	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	c0008	915	1	0	0	1	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT52_chr20_43585937_43652299	0/0	c0001	1314	179	44	45	56	10	24	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	1/1	c0002	1314	109	27	18	50	0	12	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	c0003	1314	6	5	1	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	c0004	1314	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	c0005	1314	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	c0006	1314	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	c0007	1314	1	0	0	1	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	c0008	1314	1	0	0	1	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	c0009	1314	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT56_chr7_139128778_139196986	1/1	c0001	1665	286	73	39	127	8	37	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	c0002	1665	34	12	1	21	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	c0003	1665	4	3	0	0	0	1	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	c0004	1665	3	0	0	3	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	c0005	1665	2	0	0	2	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	c0006	1665	1	0	0	1	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT57_chr3_108155812_108227424	1/1	c0001	1290	296	62	54	134	8	36	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0002	1290	36	6	10	19	0	1	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0003	1290	7	7	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0004	1290	3	0	0	3	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0005	1290	3	3	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0006	1290	2	0	1	0	0	1	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0007	1290	2	1	1	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0008	1290	1	0	0	1	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0009	1290	1	1	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0010	1290	1	1	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0011	1290	1	0	0	1	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	c0012	1290	1	1	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT70A_chr2_177607999_177623742	0/0	c0001	1998	187	29	31	102	5	20	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0002	1998	59	1	3	49	2	4	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	1/0	c0003	1998	30	17	7	1	0	4	copy fasta	IFT70A	chr2	177607999	177623742