JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFT70A_chr2_177607999_177623742	0/0	c0004	1998	30	17	1	10	0	2	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0005	1998	25	17	3	0	0	5	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0006	1998	18	0	12	0	5	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0007	1998	7	5	0	0	0	2	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0008	1998	7	2	1	4	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0009	1998	5	4	0	0	0	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0010	1998	3	0	0	3	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0011	1998	3	0	0	3	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0012	1998	2	2	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0013	1998	2	0	0	2	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0014	1998	1	0	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0015	1998	1	0	0	0	0	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0016	1998	1	0	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/1	c0017	1998	1	0	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0018	1998	1	1	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	c0019	1998	1	1	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70B_chr2_177543998_177557796	0/1	c0001	1998	319	68	54	161	7	28	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	1/0	c0002	1998	33	19	8	0	0	5	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0003	1998	10	0	0	10	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0004	1998	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0005	1998	2	2	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0006	1998	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0007	1998	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0008	1998	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0009	1998	2	2	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0010	1998	1	1	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0011	1998	1	1	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0012	1998	1	0	0	1	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0013	1998	1	0	0	1	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0014	1998	1	0	0	0	0	1	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0015	1998	1	0	0	1	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0016	1998	1	1	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	c0017	1998	1	0	0	0	1	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT74_chr9_26951412_27071134	1/1	c0001	1803	196	66	33	60	9	26	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0002	1803	64	1	15	45	0	3	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0003	1803	25	8	3	11	0	3	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0004	1803	14	0	4	5	1	4	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0005	1803	14	2	2	3	0	7	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0006	1803	13	5	3	0	2	3	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0007	1803	7	5	2	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0008	1803	3	0	3	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0009	1803	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0010	1803	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0011	1803	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0012	1803	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0013	1803	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	c0014	1803	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT80_chr3_160251986_160404225	1/1	c0001	2334	119	37	24	30	8	18	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	c0002	2334	78	44	11	11	4	8	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	c0003	2334	9	6	3	0	0	0	copy fasta	IFT80	chr3	160251986	160404225