JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IFT80_chr3_160251986_160404225	0/0	c0004	2334	2	1	1	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	c0005	2334	1	1	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	c0006	2334	1	1	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	c0007	2334	1	0	0	1	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	c0008	2334	1	0	1	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT81_chr12_110119357_110223793	1/1	c0001	2031	204	77	49	44	11	21	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	c0002	2031	9	6	3	0	0	0	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	c0003	2031	2	0	0	0	0	2	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	c0004	2031	1	1	0	0	0	0	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	c0005	2031	1	0	0	0	1	0	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	c0006	2031	1	0	0	0	0	1	copy fasta	IFT81	chr12	110119357	110223793
IFT88_chr13_20562157_20696444	0/1	c0001	2475	215	30	31	114	10	29	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	1/0	c0002	2475	33	19	9	0	4	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0003	2475	26	16	6	0	2	2	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0004	2475	8	8	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0005	2475	7	6	1	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0006	2475	5	0	0	1	0	4	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0007	2475	3	1	2	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0008	2475	3	3	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0009	2475	2	2	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0010	2475	2	2	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0011	2475	1	0	1	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0012	2475	1	0	0	0	0	1	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0013	2475	1	0	0	1	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	c0014	2475	1	1	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFTAP_chr11_36589502_36664272	1/1	c0001	666	345	83	67	150	12	31	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	c0002	666	6	6	0	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	c0003	666	2	2	0	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	c0004	666	2	2	0	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	c0005	666	1	0	0	0	0	1	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	c0006	666	1	0	1	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	c0007	666	1	1	0	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IGBP1C_chr17_58655424_58697045	1/1	c0001	1023	271	66	62	101	14	26	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1C_chr17_58655424_58697045	0/0	c0002	1023	95	30	6	43	2	14	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1C_chr17_58655424_58697045	0/0	c0003	1023	1	0	1	0	0	0	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1C_chr17_58655424_58697045	0/0	c0004	1023	1	0	1	0	0	0	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1_chrX_70128447_70171324	1/1	c0001	1020	228	63	45	81	11	26	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	c0002	1020	13	13	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	c0003	1020	1	1	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	c0004	1019	1	0	0	1	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	c0005	1020	1	1	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	c0006	1020	1	1	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGDCC3_chr15_65322127_65383002	0/1	c0001	2445	155	25	31	66	8	24	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0002	2445	88	35	27	16	5	5	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0003	2445	15	1	4	9	1	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0004	2445	14	0	0	12	0	2	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0005	2445	12	7	5	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0006	2445	4	0	3	0	0	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0007	2445	4	4	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0008	2445	3	0	0	3	0	0	copy fasta	IGDCC3	chr15	65322127	65383002