JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGDCC3_chr15_65322127_65383002	0/0	c0009	2445	2	0	0	2	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0010	2445	2	2	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0011	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0012	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0013	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0014	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0015	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0016	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0017	2445	1	0	0	0	0	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0018	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0019	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0020	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0021	2445	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0022	2445	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	1/0	c0023	2445	1	0	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0024	2445	1	0	0	0	0	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	c0025	2445	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC4_chr15_65376484_65427947	1/1	c0001	3753	60	11	11	23	1	12	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0002	3753	45	1	2	41	0	1	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0003	3753	38	10	2	21	1	4	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0004	3753	31	5	6	16	0	4	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0005	3753	27	5	7	12	1	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0006	3753	20	12	4	2	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0007	3753	15	0	0	13	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0008	3753	13	8	1	0	2	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0009	3753	10	4	2	4	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0010	3753	9	4	5	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0011	3753	7	5	2	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0012	3753	6	1	2	3	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0013	3753	5	3	0	0	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0014	3753	4	1	0	2	0	1	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0015	3753	4	0	3	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0016	3753	3	0	2	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0017	3753	3	3	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0018	3753	3	0	0	1	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0019	3753	2	0	0	0	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0020	3753	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0021	3753	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0022	3753	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0023	3753	2	0	0	0	2	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0024	3753	2	0	2	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0025	3753	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0026	3753	2	0	0	2	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0027	3753	2	1	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0028	3753	2	0	2	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0029	3753	2	0	0	2	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0030	3753	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0031	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0032	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0033	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947