JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGDCC4_chr15_65376484_65427947	0/0	c0034	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0035	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0036	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0037	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0038	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0039	3753	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0040	3753	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0041	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0042	3753	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0043	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0044	3753	1	0	0	0	0	1	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0045	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0046	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0047	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0048	3753	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0049	3753	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0050	3753	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0051	3753	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0052	3753	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0053	3753	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0054	3753	1	0	0	0	0	1	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0055	3753	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	c0056	3753	1	0	0	0	1	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGF1R_chr15_98643539_98969530	1/1	c0001	4104	119	46	23	31	2	15	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0002	4104	32	11	9	4	3	5	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0003	4104	13	1	3	7	0	2	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0004	4104	10	3	2	4	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0005	4104	6	1	0	5	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0006	4104	5	4	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0007	4104	3	3	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0008	4104	3	2	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0009	4104	2	0	2	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0010	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0011	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0012	4104	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0013	4104	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0014	4104	1	0	0	0	1	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0015	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0016	4091	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0017	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0018	4104	1	0	0	0	0	1	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0019	4104	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0020	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0021	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0022	4104	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0023	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0024	4104	1	0	0	1	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0025	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	0/0	c0026	4104	1	1	0	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1_chr12_102390874_102485563	1/1	c0001	462	358	82	68	158	14	34	copy fasta	IGF1	chr12	102390874	102485563