JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGF1_chr12_102390874_102485563	0/0	c0002	462	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	c0003	462	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF2BP1_chr17_48992385_49061145	1/1	c0001	1734	305	84	69	108	10	32	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	c0002	1734	7	7	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	c0003	1734	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	c0004	1734	1	0	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	c0005	1734	1	0	0	0	0	1	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	c0006	1734	1	1	0	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	c0007	1734	1	0	0	0	0	1	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	c0008	1734	1	0	0	1	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP2_chr3_185638130_185830042	1/1	c0001	1800	213	82	43	52	6	28	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	c0002	1800	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	c0003	1800	1	0	1	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	c0004	1800	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP3_chr7_23305209_23475491	1/0	c0001	1740	154	60	36	36	7	14	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/1	c0002	1740	39	2	7	20	3	6	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	c0003	1740	17	6	4	0	0	7	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	c0004	1740	11	10	1	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	c0005	1740	7	7	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	c0006	1740	1	1	0	0	0	0	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2BP3_chr7_23305209_23475491	0/0	c0007	1740	1	0	0	0	0	1	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2R_chr6_159964082_160116504	0/0	c0001	7476	49	7	17	10	6	9	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/1	c0002	7476	43	16	9	7	4	6	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0003	7476	39	0	9	28	0	2	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0004	7476	22	3	4	10	2	3	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0005	7476	15	1	0	14	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0006	7476	14	0	1	9	0	4	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0007	7476	14	6	0	6	0	2	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0008	7476	10	1	7	0	1	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0009	7476	8	2	0	5	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0010	7476	5	5	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0011	7476	4	4	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0012	7476	4	4	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0013	7476	4	4	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0014	7476	3	3	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0015	7476	3	0	0	3	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0016	7476	3	3	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0017	7476	3	0	0	3	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0018	7476	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0019	7476	2	0	2	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	1/0	c0020	7476	2	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0021	7476	2	0	0	0	1	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0022	7476	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0023	7476	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0024	7476	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0025	7476	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0026	7476	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0027	7476	2	0	1	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0028	7476	2	0	0	2	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0029	7476	2	0	0	2	0	0	copy fasta	IGF2R	chr6	159964082	160116504