JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALDH5A1_chr6_24489969_24542207	0/0	c0016	1608	1	0	0	0	0	1	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	c0017	1608	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH6A1_chr14_74051847_74089453	1/1	c0001	1608	389	90	70	174	14	39	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0002	1608	3	3	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0003	1608	2	0	2	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0004	1608	2	0	2	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0005	1608	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0006	1608	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0007	1608	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0008	1503	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0009	1608	1	1	0	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	c0010	1608	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH7A1_chr5_126536841_126600219	1/1	c0001	1620	280	64	52	118	9	35	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0002	1620	37	1	8	26	1	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0003	1620	22	18	1	0	0	3	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0004	1620	18	9	0	8	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0005	1620	14	0	0	13	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0006	1620	4	0	0	4	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0007	1620	1	0	0	0	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0008	1620	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0009	1605	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0010	1620	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	c0011	1620	1	0	1	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH8A1_chr6_134912393_134955101	1/1	c0001	1464	287	81	52	110	18	24	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0002	1464	65	0	12	40	0	13	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0003	1464	5	5	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0004	1464	3	3	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0005	1464	2	2	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0006	1464	1	0	0	0	0	1	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0007	1464	1	0	0	1	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0008	1464	1	0	1	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0009	1464	1	1	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0010	1464	1	1	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0011	1464	1	0	1	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0012	1464	1	0	0	1	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	c0013	1464	1	1	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH9A1_chr1_165657216_165703562	0/0	c0001	1557	191	36	36	91	5	23	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	1/0	c0002	1557	45	24	10	0	3	7	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0003	1557	32	8	16	1	2	5	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/1	c0004	1557	18	7	3	3	1	3	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0005	1557	11	0	5	3	0	3	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0006	1557	10	9	0	1	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0007	1557	5	1	1	0	1	2	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0008	1557	4	4	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0009	1557	4	0	2	0	1	1	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0010	1557	2	0	0	2	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0011	1557	2	0	2	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0012	1557	1	1	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0013	1557	1	1	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0014	1557	1	0	0	1	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562