JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGF2R_chr6_159964082_160116504	0/0	c0030	7476	2	0	0	1	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0031	7476	2	1	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0032	7476	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0033	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0034	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0035	7476	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0036	7476	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0037	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0038	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0039	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0040	7476	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0041	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0042	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0043	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0044	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0045	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0046	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0047	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0048	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0049	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0050	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0051	7476	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0052	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0053	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0054	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0055	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0056	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0057	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0058	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0059	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0060	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0061	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0062	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0063	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0064	7476	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0065	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0066	7476	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0067	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0068	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	c0069	7476	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2_chr11_2124117_2144389	1/1	c0001	543	379	89	75	157	18	38	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	c0002	543	6	5	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	c0003	543	2	2	0	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	c0004	543	1	0	0	1	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGFALS_chr16_1785413_1798705	0/1	c0001	1818	191	25	49	83	13	20	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	1/0	c0002	1818	98	17	19	50	1	10	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0003	1818	68	19	6	28	1	14	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0004	1818	24	23	0	0	0	1	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0005	1818	16	0	0	14	1	1	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0006	1818	9	0	0	9	0	0	copy fasta	IGFALS	chr16	1785413	1798705