JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGFALS_chr16_1785413_1798705	0/0	c0007	1818	7	0	0	7	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0008	1818	5	0	0	5	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0009	1818	4	0	0	4	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0010	1818	4	0	0	4	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0011	1818	3	3	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0012	1818	2	2	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0013	1818	2	0	0	0	0	2	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0014	1818	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0015	1818	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0016	1818	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0017	1818	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0018	1818	1	0	1	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0019	1818	1	0	1	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0020	1818	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0021	1818	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0022	1818	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0023	1818	1	0	1	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0024	1818	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0025	1809	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0026	1818	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0027	1818	1	0	1	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0028	1818	1	0	0	0	0	1	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0029	1818	1	0	0	0	0	1	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0030	1818	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0031	1818	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	c0032	1818	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFBP1_chr7_45883488_45898660	1/0	c0001	780	255	52	48	112	10	32	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/1	c0002	780	158	20	28	96	5	8	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	c0003	780	26	19	2	0	1	4	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	c0004	780	3	3	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	c0005	780	1	1	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	c0006	780	1	1	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	c0007	780	1	1	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	c0008	780	1	1	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP2_chr2_216628420_216669436	0/1	c0001	987	370	95	62	156	12	44	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	c0002	987	24	1	4	19	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	1/0	c0003	978	5	3	0	1	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	c0004	987	1	0	0	0	0	1	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	c0005	987	1	0	0	0	0	1	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	c0006	987	1	1	0	0	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP3_chr7_45907245_45926272	1/0	c0001	876	200	66	59	40	8	26	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/1	c0002	876	199	22	21	133	7	15	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	c0003	876	32	2	1	27	1	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	c0004	876	2	2	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	c0005	876	1	0	1	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	c0006	876	1	0	0	0	0	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	c0007	876	1	0	0	0	0	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP4_chr17_40438450_40462725	1/1	c0001	777	239	79	44	81	9	24	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	c0002	777	146	5	36	72	9	24	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	c0003	777	4	4	0	0	0	0	copy fasta	IGFBP4	chr17	40438450	40462725