JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGFBP4_chr17_40438450_40462725	0/0	c0004	777	1	0	0	1	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP5_chr2_216667105_216700549	0/1	c0001	819	381	78	72	180	11	39	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0002	819	15	9	1	2	0	3	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	1/0	c0003	819	9	7	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0004	819	4	3	0	1	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0005	819	3	0	1	0	2	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0006	819	2	0	1	0	0	1	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0007	819	2	2	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0008	819	1	0	0	1	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0009	819	1	0	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0010	819	1	0	0	0	0	1	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0011	819	1	1	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0012	819	1	0	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	c0013	819	1	0	0	0	1	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP6_chr12_53092667_53107340	1/1	c0001	723	386	86	72	168	10	48	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	c0002	723	17	0	0	17	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	c0003	723	8	8	0	0	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	c0004	723	2	2	0	0	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	c0005	723	1	1	0	0	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	c0006	723	1	1	0	0	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	c0007	723	1	0	0	1	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP7_chr4_57025773_57115385	1/1	c0001	849	333	94	64	132	5	36	copy fasta	IGFBP7	chr4	57025773	57115385
IGFBP7_chr4_57025773_57115385	0/0	c0002	849	13	0	8	0	3	2	copy fasta	IGFBP7	chr4	57025773	57115385
IGFBPL1_chr9_38401528_38429454	1/1	c0001	837	346	73	69	157	7	38	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	c0002	837	85	10	15	46	5	9	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	c0003	837	6	5	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	c0004	831	5	4	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	c0005	837	3	0	0	0	0	3	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	c0006	837	2	2	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	c0007	837	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFL1_chr19_46224742_46236243	1/1	c0001	333	417	89	76	197	10	43	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	c0002	333	13	6	3	1	0	3	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	c0003	333	2	2	0	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	c0004	333	1	0	1	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	c0005	333	1	1	0	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL2_chr19_46143238_46166289	1/1	c0001	360	408	86	65	202	17	36	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	c0002	360	27	8	1	13	1	4	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	c0003	360	12	0	0	12	0	0	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	c0004	360	2	2	0	0	0	0	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	c0005	360	2	0	0	0	0	2	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	c0006	360	1	0	0	1	0	0	copy fasta	IGFL2	chr19	46143238	46166289
IGFL3_chr19_46115067_46129688	0/0	c0000	0	32	10	3	14	1	4	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	1/1	c0001	378	391	70	74	192	13	40	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	0/0	c0002	378	6	6	0	0	0	0	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	0/0	c0003	378	3	2	1	0	0	0	copy fasta	IGFL3	chr19	46115067	46129688
IGFL4_chr19_46034182_46046002	1/1	c0001	375	380	72	64	187	18	37	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	c0002	375	48	3	8	29	0	8	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	c0003	375	21	15	6	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	c0004	375	2	0	0	2	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	c0005	375	1	0	0	0	0	1	copy fasta	IGFL4	chr19	46034182	46046002