JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGFL4_chr19_46034182_46046002	0/0	c0006	363	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	c0007	375	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFLR1_chr19_35733801_35747452	1/1	c0001	1068	321	83	58	132	10	36	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0002	1068	42	9	10	13	4	6	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0003	1068	26	0	0	26	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0004	1068	3	0	3	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0005	1068	3	0	2	0	0	1	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0006	1068	3	0	0	0	0	3	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0007	1068	2	0	2	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0008	1068	2	2	0	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0009	1068	1	1	0	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0010	1068	1	0	1	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0011	1068	1	1	0	0	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	c0012	1068	1	0	0	1	0	0	copy fasta	IGFLR1	chr19	35733801	35747452
IGFN1_chr1_201185824_201233952	0/0	c0001	11235	33	3	11	14	0	5	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0002	11451	24	2	1	19	1	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0003	11451	20	0	1	18	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0004	11235	16	2	4	10	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0005	11451	15	8	4	1	0	2	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0006	11343	12	2	5	0	0	5	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0007	11451	11	0	0	11	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0008	11451	11	1	4	0	5	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0009	11451	10	0	0	9	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0010	11451	10	0	4	5	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0011	11451	8	8	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0012	11451	8	3	1	1	1	2	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0013	11235	7	0	0	2	0	5	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0014	11451	7	6	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0015	11127	6	6	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0016	11451	6	0	0	6	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0017	11235	5	0	0	5	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0018	11451	5	0	0	5	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0019	11451	5	0	0	5	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0020	11343	5	0	3	0	1	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0021	11451	4	4	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0022	11235	4	0	0	4	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0023	11451	4	0	0	3	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0024	11451	4	0	2	0	1	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0025	11451	4	0	0	4	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0026	11343	3	3	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0027	11451	3	3	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0028	11451	3	0	0	3	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0029	11451	3	3	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0030	11235	3	0	0	0	2	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0031	11451	3	0	3	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0032	11451	3	0	0	3	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0033	11451	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0034	11343	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0035	11451	2	0	0	0	0	2	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0036	11451	2	0	1	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952