JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGFN1_chr1_201185824_201233952	0/0	c0037	11451	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0038	11451	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0039	11451	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0040	11451	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0041	11235	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0042	11235	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0043	11235	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0044	11235	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0045	11559	2	2	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0046	11451	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0047	11451	2	2	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0048	11451	2	0	0	1	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0049	11451	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0050	11451	2	2	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0051	11235	2	2	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0052	11451	2	0	1	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0053	11451	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0054	11235	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0055	11235	2	0	1	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0056	11343	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0057	11451	2	1	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0058	11451	2	0	1	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/1	c0059	11451	2	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0060	11451	2	0	2	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0061	11451	2	0	0	2	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0062	11451	2	2	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0063	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0064	11450	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0065	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0066	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0067	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0068	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0069	10911	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0070	11343	1	0	0	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0071	11127	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0072	11127	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0073	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0074	11559	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0075	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0076	11235	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0077	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0078	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0079	11450	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0080	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0081	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0082	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0083	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0084	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0085	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0086	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952