JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGFN1_chr1_201185824_201233952	0/0	c0087	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0088	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0089	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0090	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0091	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0092	11127	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0093	11235	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0094	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0095	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0096	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0097	11235	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0098	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0099	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0100	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0101	11235	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0102	11235	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0103	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0104	10587	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0105	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0106	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0107	11559	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0108	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0109	11452	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0110	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0111	11127	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0112	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0113	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0114	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0115	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0116	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0117	11127	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0118	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0119	11127	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0120	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0121	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0122	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0123	11451	1	0	0	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0124	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0125	11127	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0126	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0127	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0128	12638	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0129	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0130	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0131	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0132	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0133	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0134	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0135	11451	1	0	0	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0136	11451	1	0	0	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952