JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGFN1_chr1_201185824_201233952	0/0	c0137	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0138	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0139	11235	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0140	11235	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0141	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0142	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0143	11235	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0144	11235	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0145	11343	1	0	0	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0146	11343	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0147	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0148	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0149	11559	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0150	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0151	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0152	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0153	11343	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	1/0	c0154	11127	1	0	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0155	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0156	11451	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0157	11451	1	0	0	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0158	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0159	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0160	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0161	11452	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0162	11451	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0163	11991	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0164	11451	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	c0165	11451	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGHMBP2_chr11_68898891_68945601	1/0	c0001	2982	127	34	11	68	3	10	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0002	2982	78	5	20	37	2	14	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/1	c0003	2982	46	1	9	27	2	6	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0004	2982	37	9	14	5	6	3	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0005	2982	19	16	2	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0006	2982	16	0	1	15	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0007	2982	7	6	0	0	0	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0008	2982	4	3	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0009	2982	4	0	2	0	0	2	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0010	2982	4	0	0	3	0	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0011	2982	3	3	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0012	2982	3	0	0	3	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0013	2982	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0014	2982	2	0	0	0	0	2	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0015	2982	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0016	2982	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0017	2982	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0018	2982	1	0	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0019	2982	1	0	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0020	2982	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0021	2982	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601