JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGHMBP2_chr11_68898891_68945601	0/0	c0022	2982	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0023	2982	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0024	2982	1	0	0	0	0	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0025	2982	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0026	2982	1	0	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0027	2982	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0028	2982	1	0	0	0	1	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0029	2982	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0030	2982	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0031	2982	1	0	0	0	1	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0032	2982	1	0	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	c0033	2982	1	0	0	0	1	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGIP_chr5_140120937_140134392	1/1	c0001	162	309	73	62	112	14	46	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	c0002	162	3	3	0	0	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	c0003	162	2	0	2	0	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGLL1_chr22_23568125_23585290	1/1	c0001	642	295	39	58	151	13	32	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0002	642	70	0	13	49	2	6	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0003	642	12	10	2	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0004	642	12	11	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0005	642	11	10	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0006	642	10	3	0	7	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0007	642	9	4	2	0	1	2	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0008	642	9	0	2	6	0	1	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0009	642	6	4	2	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0010	642	5	3	2	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0011	642	5	0	0	0	0	5	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0012	642	4	0	0	0	1	3	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0013	642	3	3	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0014	642	3	0	0	3	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0015	642	3	3	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0016	642	2	0	0	2	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0017	642	2	0	0	1	1	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0018	642	2	2	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0019	642	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0020	642	1	0	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0021	642	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0022	642	1	0	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0023	642	1	0	0	1	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0024	642	1	0	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0025	642	1	0	0	1	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0026	642	1	0	0	1	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0027	642	1	0	0	0	0	1	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0028	642	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	c0029	642	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL5_chr22_22882816_22901111	1/1	c0001	645	252	44	53	112	8	33	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0002	645	9	7	1	0	0	1	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0003	645	7	4	1	0	0	2	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0004	645	6	0	0	6	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0005	645	5	5	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0006	645	3	0	0	3	0	0	copy fasta	IGLL5	chr22	22882816	22901111