JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGLL5_chr22_22882816_22901111	0/0	c0007	645	3	3	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0008	645	3	0	0	3	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0009	645	2	2	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0010	645	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0011	645	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0012	645	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0013	645	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0014	645	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0015	645	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0016	645	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0017	645	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0018	645	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0019	645	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0020	645	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	c0021	645	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLON5_chr19_51306644_51335891	1/1	c0001	1011	403	93	73	174	16	45	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0002	1011	4	0	0	4	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0003	1011	2	0	0	2	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0004	1011	2	0	0	0	0	2	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0005	1011	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0007	1011	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0008	1011	1	0	0	0	0	1	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0009	1011	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0010	1011	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	c0011	1011	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGSF10_chr3_151431203_151466061	0/1	c0001	7872	143	24	25	64	9	20	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0002	7872	60	18	10	26	3	3	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	1/0	c0003	7872	51	0	9	30	2	9	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0004	7872	20	0	0	19	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0005	7872	13	0	1	12	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0006	7872	12	0	3	6	0	3	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0007	7872	10	0	5	3	1	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0008	7872	9	0	0	9	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0009	7872	8	7	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0010	7872	7	7	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0011	7872	5	4	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0012	7872	4	0	4	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0013	7872	4	4	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0014	7872	4	0	0	4	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0015	7872	4	0	0	0	0	4	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0016	7872	3	3	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0017	7872	3	0	2	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0018	7872	3	3	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0019	7872	3	1	2	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0020	7872	2	0	1	0	1	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0021	7872	2	1	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0022	7872	2	0	0	2	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0023	7872	2	0	1	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0024	7872	2	2	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061