JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGSF10_chr3_151431203_151466061	0/0	c0025	7872	2	2	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0026	7872	2	1	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0027	7872	2	1	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0028	7872	2	0	0	2	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0029	7872	2	0	2	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0030	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0031	7872	1	0	0	0	1	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0032	7872	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0033	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0034	7872	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0035	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0036	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0037	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0038	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0039	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0040	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0041	7872	1	0	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0042	7872	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0043	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0044	7872	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0045	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0046	7872	1	0	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0047	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0048	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0049	7872	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0050	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0051	7872	1	0	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0052	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0053	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0054	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0055	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0056	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0057	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0058	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0059	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0060	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0061	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0062	7872	1	0	0	0	1	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0063	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0064	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0065	7872	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0066	7872	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	c0067	7872	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF11_chr3_118895557_119039846	0/1	c0001	1296	214	46	40	93	9	25	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	c0002	1296	89	22	21	30	3	13	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	1/0	c0003	1296	39	0	2	25	4	7	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	c0004	1296	8	8	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	c0005	1296	4	4	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	c0006	1296	2	2	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	c0007	1296	1	1	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846