JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALDH9A1_chr1_165657216_165703562	0/0	c0015	1557	1	0	0	1	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0016	1557	1	0	0	1	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0017	1557	1	1	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0018	1557	1	0	1	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	c0019	1557	1	0	0	0	1	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDOA_chr16_30060760_30075414	1/1	c0001	1257	348	79	53	160	14	40	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0002	1257	12	2	8	2	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0003	1257	3	3	0	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0004	1257	1	0	0	1	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0005	1257	1	1	0	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0006	1257	1	0	1	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0007	1257	1	1	0	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0008	1257	1	0	0	0	0	1	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0009	1257	1	0	0	1	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	c0010	1257	1	0	0	0	0	1	copy fasta	ALDOA	chr16	30060760	30075414
ALDOB_chr9_101415560_101440774	1/1	c0001	1095	397	91	74	169	16	45	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	c0002	1095	14	0	0	13	0	1	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	c0003	1095	3	3	0	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	c0004	1095	1	0	1	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	c0005	1095	1	0	0	1	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	c0006	1095	1	0	1	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	c0007	1095	1	0	0	1	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOC_chr17_28568120_28581895	1/1	c0001	1095	338	78	63	149	8	38	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0002	1095	3	0	0	3	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0003	1095	3	3	0	0	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0004	1095	1	0	0	1	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0005	1095	1	1	0	0	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0006	1095	1	1	0	0	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0007	1095	1	0	0	1	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0009	1095	1	1	0	0	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0010	1095	1	0	0	1	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	c0011	1095	1	0	1	0	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALG10B_chr12_38311774_38334721	0/1	c0001	1422	223	57	50	90	6	19	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0002	1422	96	4	2	83	1	6	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0003	1422	81	13	24	24	8	12	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	1/0	c0004	1422	15	13	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0005	1422	7	1	1	0	0	5	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0006	1422	6	0	0	6	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0007	1422	5	0	4	0	1	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0008	1422	5	5	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0009	1422	4	4	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0010	1422	2	0	2	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0011	1422	2	0	0	2	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0012	1422	2	0	0	2	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0013	1422	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0014	1422	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0015	1422	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	c0016	1422	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10_chr12_34017496_34033302	1/1	c0001	1422	294	62	68	116	12	34	copy fasta	ALG10	chr12	34017496	34033302