JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGSF11_chr3_118895557_119039846	0/0	c0008	1296	1	1	0	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	c0009	1296	1	0	0	0	0	1	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	c0010	1296	1	0	1	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF1_chrX_131268506_131294306	0/0	c0001	4011	106	18	8	70	1	9	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/1	c0002	4011	51	2	12	23	5	8	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0003	4011	49	4	9	25	1	10	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0004	4011	41	22	12	0	4	3	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0005	4011	15	3	9	0	0	3	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0006	4011	13	0	0	13	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	1/0	c0007	4011	9	7	1	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0008	4011	8	8	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0009	4011	7	0	1	4	1	1	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0010	4011	3	3	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0011	4011	3	3	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0012	4011	2	0	0	2	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0013	4011	2	2	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0014	4011	2	0	0	2	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0015	4011	1	0	1	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0016	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0017	4011	1	0	1	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0018	4011	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0019	4011	1	0	1	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0020	4011	1	0	0	0	1	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0021	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0022	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0023	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0024	4009	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0025	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0026	4010	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0027	4015	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0028	4007	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0029	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0030	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	c0031	4011	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF21_chr1_18102798_18383483	1/1	c0001	1404	213	64	53	57	10	27	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0002	1404	11	9	1	1	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0003	1404	9	6	3	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0004	1404	4	3	1	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0005	1404	2	0	0	0	0	2	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0006	1404	2	0	0	2	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0007	1404	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0008	1404	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0009	1404	1	0	1	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0010	1404	1	0	1	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0011	1404	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0012	1404	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	c0013	1404	1	0	0	0	0	1	copy fasta	IGSF21	chr1	18102798	18383483
IGSF22_chr11_18699312_18731188	0/0	c0001	3981	137	28	15	70	5	19	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0002	3981	54	2	10	28	1	13	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/1	c0003	3981	40	0	11	26	2	0	copy fasta	IGSF22	chr11	18699312	18731188