JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGSF22_chr11_18699312_18731188	0/0	c0004	3981	39	0	4	35	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0005	3981	17	2	10	1	2	2	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0006	3981	17	13	4	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0007	3981	15	2	5	6	0	2	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0008	3981	14	0	0	14	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0009	3981	14	8	0	5	1	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0010	3981	10	1	3	4	1	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0011	3981	10	9	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0012	3981	6	0	2	0	3	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0013	3981	5	5	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0014	3981	5	0	5	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0015	3981	5	4	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0016	3981	4	2	1	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0017	3981	3	0	0	3	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0018	3981	3	0	0	3	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0019	3981	2	0	0	2	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0020	3981	2	0	1	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0021	3981	2	2	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0022	3981	2	0	0	0	0	2	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0023	3981	2	0	1	0	0	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0024	3981	2	0	0	0	2	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0025	3981	2	2	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0026	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0027	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0028	3981	1	0	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0029	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0030	3981	1	0	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0031	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0032	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0033	3981	1	0	0	0	0	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0034	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0035	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0036	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0037	3981	1	0	0	0	1	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0038	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0039	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0040	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0041	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0042	3981	1	0	0	0	0	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0043	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0044	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0045	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0046	3981	1	0	0	0	0	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0047	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0048	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0049	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0050	3981	1	0	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0051	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0052	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	1/0	c0053	3981	1	0	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188