JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGSF22_chr11_18699312_18731188	0/0	c0054	3981	1	0	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0055	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0056	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0057	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0058	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0059	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0060	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0061	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0062	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0063	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0064	3981	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	c0065	3981	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF23_chr19_44608563_44641781	1/1	c0001	579	420	90	80	192	14	42	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	c0002	579	1	1	0	0	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF23_chr19_44608563_44641781	0/0	c0003	579	1	1	0	0	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF3_chr1_116569408_116672733	0/0	c0001	3585	72	19	10	34	1	8	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	1/0	c0002	3585	67	18	15	21	5	7	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/1	c0003	3588	56	11	18	9	5	12	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0004	3585	16	14	2	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0005	3585	8	6	0	0	0	2	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0006	3585	7	0	0	7	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0007	3585	5	5	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0008	3585	4	0	0	3	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0009	3585	4	1	1	2	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0010	3585	2	2	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0011	3585	2	0	2	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0012	3585	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0013	3585	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0014	3585	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0015	3585	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0016	3585	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0017	3588	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0018	3588	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0019	3585	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0020	3585	1	0	0	0	1	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0021	3585	1	0	1	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0022	3585	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0023	3588	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0024	3585	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0025	3585	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0026	3585	1	0	0	0	1	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0027	3588	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0028	3588	1	0	1	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0029	3585	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0030	3588	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0031	3585	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	c0032	3585	1	0	0	0	1	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF5_chr21_39740183_39807081	0/0	c0001	1224	85	2	15	54	4	10	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0002	1224	55	7	5	36	1	6	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	1/0	c0003	1224	54	23	8	11	3	8	copy fasta	IGSF5	chr21	39740183	39807081