JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGSF5_chr21_39740183_39807081	0/0	c0004	1224	45	8	8	27	0	2	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0005	1224	22	1	12	0	3	6	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0006	1224	13	7	2	4	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0007	1224	13	12	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0008	1224	13	10	3	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0009	1224	11	1	5	3	0	2	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0010	1224	10	0	0	9	0	1	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0011	1224	8	6	0	2	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0012	1224	5	5	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0013	1224	2	0	1	0	1	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0014	1224	2	2	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0015	1224	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0016	1224	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0017	1224	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0018	1224	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0019	1224	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/1	c0020	1224	1	0	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0021	1224	1	0	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0022	1224	1	0	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0023	1224	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0024	1224	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0025	1224	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0026	1224	1	0	0	0	0	1	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0027	1224	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	c0028	1224	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF6_chr16_21634550_21657608	1/1	c0001	726	402	75	75	193	14	43	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0002	726	3	3	0	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0003	726	1	0	1	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0004	726	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0005	726	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0006	726	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0007	726	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0008	726	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	c0009	726	1	0	0	0	0	1	copy fasta	IGSF6	chr16	21634550	21657608
IGSF8_chr1_160086343_160103619	1/1	c0001	1842	293	76	60	116	8	31	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0002	1842	44	1	6	32	0	5	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0003	1842	30	1	11	12	2	4	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0004	1842	21	0	1	20	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0005	1842	6	6	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0006	1842	4	4	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0007	1842	4	4	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0008	1842	4	0	0	4	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0009	1842	2	0	0	0	2	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0010	1842	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0011	1842	1	0	0	0	1	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0012	1842	1	0	0	0	1	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0013	1842	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0014	1842	1	1	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0015	1842	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	c0016	1842	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619