JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGSF8_chr1_160086343_160103619	0/0	c0017	1842	1	1	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF9B_chr11_133891438_133961968	0/0	c0001	4314	112	20	25	57	3	7	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/1	c0002	4314	78	3	19	43	6	6	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	1/0	c0003	4314	47	27	3	8	0	8	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0004	4314	41	4	11	14	2	10	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0005	4314	18	5	10	0	0	3	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0006	4314	8	3	3	0	2	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0007	4314	5	1	4	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0008	4314	4	4	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0009	4314	4	4	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0010	4314	3	0	0	0	1	2	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0011	4314	3	3	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0012	4314	2	2	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0013	4314	2	0	0	2	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0014	4314	2	0	0	2	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0015	4314	2	0	0	0	1	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0016	4314	2	0	2	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0017	4314	2	0	0	0	0	2	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0018	4314	2	2	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0019	4314	2	1	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0020	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0021	4314	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0022	4314	1	0	0	0	1	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0023	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0024	4314	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0025	4314	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0026	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0027	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0028	4314	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0029	4314	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0030	4314	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0031	4314	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0032	4314	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0033	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0034	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0035	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0036	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0037	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0038	4314	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0039	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0040	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0041	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	c0042	4314	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9_chr1_159922041_159950613	0/1	c0001	3540	136	24	24	70	6	11	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	1/0	c0002	3540	115	21	20	46	8	19	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0003	3540	49	0	6	40	0	3	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0004	3540	23	0	13	10	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0005	3540	21	17	3	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0006	3540	13	11	1	0	1	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0007	3540	12	0	1	2	1	8	copy fasta	IGSF9	chr1	159922041	159950613