JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IGSF9_chr1_159922041_159950613	0/0	c0008	3540	9	1	3	5	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0009	3540	8	2	0	6	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0010	3540	5	0	0	5	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0011	3540	4	3	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0012	3540	4	0	0	3	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0013	3540	3	0	3	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0014	3540	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0015	3540	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0016	3540	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0017	3540	2	0	0	0	0	2	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0018	3540	1	0	0	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0019	3540	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0020	3540	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0021	3540	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0022	3540	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0023	3540	1	0	0	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0024	3540	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0025	3528	1	0	0	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0026	3540	1	0	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0027	3540	1	0	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0028	3540	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0029	3540	1	0	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0030	3540	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	c0031	3540	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IHH_chr2_219049424_219065921	0/1	c0001	1236	155	43	24	64	7	16	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0002	1236	112	25	19	60	1	7	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	1/0	c0003	1236	59	0	14	31	3	10	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0004	1236	41	10	3	24	1	3	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0005	1236	14	0	0	14	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0006	1236	7	7	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0007	1236	3	3	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0008	1236	2	2	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0009	1236	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0010	1236	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0011	1236	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0012	1236	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	c0013	1236	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHO1_chr3_49194498_49263106	0/0	c0001	1785	100	33	24	23	10	10	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	c0002	1785	66	45	12	1	5	3	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	c0003	1785	20	4	4	8	2	2	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	c0004	1785	7	0	0	6	0	1	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	c0005	1785	1	1	0	0	0	0	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	c0006	1785	1	0	0	0	1	0	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	c0007	1785	1	1	0	0	0	0	copy fasta	IHO1	chr3	49194498	49263106
IKBIP_chr12_98619249_98649788	1/1	c0001	1134	391	81	65	181	16	46	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0002	1134	8	7	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0003	1134	2	2	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0004	1134	2	2	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0005	1134	2	1	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0006	1134	2	1	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788