JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IKBIP_chr12_98619249_98649788	0/0	c0007	1134	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0008	1134	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0009	1134	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0010	1134	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0011	1134	1	0	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0012	1134	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	c0013	1134	1	0	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBKB_chr8_42266302_42337460	1/1	c0001	2271	257	82	42	95	8	28	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0002	2271	9	0	0	9	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0003	2271	5	5	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0004	2271	2	0	2	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0005	2271	1	0	0	1	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0006	2271	1	0	0	1	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0007	2271	1	1	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0008	2271	1	1	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	c0009	2271	1	1	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKE_chr1_206465476_206501889	0/0	c0001	2151	162	35	28	68	10	21	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0002	2151	87	12	5	61	0	9	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/1	c0003	2151	36	1	10	16	4	4	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0004	2151	30	8	8	13	0	1	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0005	2151	30	0	17	13	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0006	2151	22	14	0	8	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	1/0	c0007	2151	19	6	4	2	3	3	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0008	2151	10	10	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0009	2151	9	0	0	9	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0010	2151	8	2	4	0	0	2	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0011	2151	8	1	2	3	1	1	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0012	2151	7	0	0	7	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0013	2151	6	0	2	4	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0014	2151	5	0	4	0	0	1	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0015	2151	2	0	0	2	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0016	2151	2	0	0	2	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0017	2151	2	2	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0018	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0019	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0020	2151	1	0	0	1	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0021	2151	1	0	1	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0022	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0023	2151	1	0	1	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0024	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0025	2151	1	0	0	0	0	1	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0026	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0027	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0028	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0029	2151	1	0	0	0	0	1	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0030	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0031	2151	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	c0032	2151	1	0	0	1	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKG_chrX_154542620_154570033	1/1	c0001	1260	232	69	42	83	6	30	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	c0002	1260	4	0	4	0	0	0	copy fasta	IKBKG	chrX	154542620	154570033