JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IKBKG_chrX_154542620_154570033	0/0	c0003	1260	4	4	0	0	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	c0004	1263	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	c0005	1258	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	c0006	1259	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	c0007	1260	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	c0009	1261	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKZF1_chr7_50299716_50410101	1/1	c0001	1560	219	58	39	94	9	17	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	c0002	1560	35	2	0	29	1	3	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	c0003	1560	29	3	11	3	2	10	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	c0004	1560	2	2	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	c0005	1560	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF2_chr2_212994698_213156612	1/1	c0001	1581	222	76	30	81	7	26	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	c0002	1581	25	2	15	1	1	6	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	c0003	1581	2	1	1	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	c0004	1581	2	2	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	c0005	1581	2	1	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	c0006	1581	1	0	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF3_chr17_39752718_39869312	1/1	c0001	1530	147	60	20	44	4	17	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0002	1530	94	13	23	46	3	9	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0003	1530	6	0	3	0	3	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0004	1530	2	2	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0005	1530	2	2	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0006	1530	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0007	1530	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0008	1530	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0009	1530	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	c0010	1530	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF4_chr12_56016043_56043435	1/1	c0001	1758	321	80	65	140	10	24	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	c0002	1758	2	0	0	2	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	c0003	1758	2	0	0	2	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	c0004	1758	1	0	1	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	c0005	1758	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	c0006	1758	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	c0007	1758	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	c0008	1758	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF5_chr10_122985807_123013795	1/1	c0001	1260	396	91	71	172	16	44	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	c0002	1260	5	0	0	5	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	c0003	1260	1	1	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	c0004	1260	1	0	0	1	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	c0005	1260	1	0	1	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IK_chr5_140642829_140667480	1/1	c0001	1674	373	92	51	173	15	40	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	c0002	1674	3	1	2	0	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	c0003	1674	2	1	1	0	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	c0004	1708	1	0	0	1	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	c0005	1674	1	0	0	0	1	0	copy fasta	IK	chr5	140642829	140667480
IL10RA_chr11_117981394_118006483	0/1	c0001	1737	166	17	32	91	2	23	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0002	1737	85	1	5	71	3	5	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0003	1737	45	15	13	13	1	3	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	1/0	c0004	1737	31	17	10	0	0	3	copy fasta	IL10RA	chr11	117981394	118006483