JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL10RA_chr11_117981394_118006483	0/0	c0005	1737	25	16	1	5	1	2	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0006	1737	19	1	6	0	5	7	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0007	1737	11	11	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0008	1737	7	0	0	7	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0009	1737	7	1	4	0	1	1	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0010	1737	5	5	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0011	1737	4	3	1	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0012	1737	2	1	1	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0013	1737	2	0	0	2	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0014	1737	2	0	0	0	2	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0015	1737	2	0	0	2	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0016	1737	2	2	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0017	1737	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0018	1737	1	0	1	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0019	1737	1	0	0	0	1	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0020	1737	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0021	1737	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0022	1737	1	1	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0023	1749	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0024	1737	1	1	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0025	1737	1	1	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0026	1737	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	c0027	1737	1	1	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RB_chr21_33261367_33302221	1/1	c0001	978	263	94	38	87	14	28	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	c0002	978	154	4	35	91	4	20	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	c0003	978	2	2	0	0	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	c0004	978	2	0	2	0	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	c0005	978	2	0	0	2	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	c0006	978	1	0	0	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	c0007	978	1	0	1	0	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	c0008	978	1	0	0	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10_chr1_206762602_206777494	1/1	c0001	537	451	100	78	214	15	42	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	c0002	537	1	0	0	0	1	0	copy fasta	IL10	chr1	206762602	206777494
IL11RA_chr9_34647185_34666902	1/1	c0001	1269	370	91	72	143	12	50	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	c0002	1269	3	0	0	3	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	c0003	1269	3	0	0	3	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	c0004	1269	2	2	0	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	c0005	1269	2	0	0	2	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	c0006	1269	2	0	2	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	c0007	1269	1	0	0	1	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	c0008	1269	1	1	0	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11_chr19_55359382_55375463	1/1	c0001	600	210	94	36	45	6	27	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	c0002	600	134	2	31	79	6	16	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	c0003	600	2	0	1	0	0	1	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	c0004	600	2	0	0	2	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	c0005	600	1	0	0	1	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	c0006	600	1	0	0	1	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	c0007	600	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	c0008	600	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL12A_chr3_159983835_160001019	1/1	c0001	660	422	89	82	187	16	46	copy fasta	IL12A	chr3	159983835	160001019