JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL12A_chr3_159983835_160001019	0/0	c0002	660	5	4	1	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	c0003	660	2	1	1	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	c0004	660	1	1	0	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	c0005	660	1	1	0	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	c0006	660	1	0	0	1	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12B_chr5_159309780_159335487	1/1	c0001	987	374	89	66	169	15	33	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0002	987	6	0	0	6	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0003	987	3	0	0	3	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0004	987	2	0	0	0	1	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0005	987	2	0	0	2	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0006	987	1	1	0	0	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0007	987	1	0	0	0	0	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0008	987	1	0	0	1	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0009	987	1	0	0	0	0	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	c0010	987	1	0	0	1	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12RB1_chr19_18053995_18091934	1/1	c0001	1989	244	65	53	87	10	27	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0002	1989	57	6	10	32	5	4	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0003	1989	40	3	1	33	1	2	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0004	1989	18	0	9	0	2	7	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0005	1989	10	9	1	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0006	1989	7	0	0	6	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0007	1989	6	0	0	6	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0008	1989	4	3	1	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0009	1989	3	0	0	3	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0010	1989	3	3	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0011	1989	2	2	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0012	1989	2	0	1	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0013	1989	1	0	1	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0014	1989	1	0	0	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0015	1989	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0016	1989	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0017	1989	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0018	1989	1	0	0	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0019	1989	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0020	1989	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0021	1989	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0022	1989	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0023	1989	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0024	1989	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0025	1989	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0026	1989	1	0	1	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0027	1989	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	c0028	1989	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB2_chr1_67302873_67403724	0/0	c0001	2589	102	15	18	52	3	14	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/1	c0002	2589	101	11	26	45	4	14	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	1/0	c0003	2589	61	16	5	35	2	2	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0004	2589	19	1	5	8	3	2	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0005	2589	13	13	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0006	2589	10	6	4	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0007	2589	6	6	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724