JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL12RB2_chr1_67302873_67403724	0/0	c0008	2589	5	5	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0009	2589	4	0	0	4	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0010	2589	3	2	1	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0011	2589	3	3	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0012	2589	2	0	1	0	1	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0013	2589	2	0	0	1	0	1	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0014	2589	2	2	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0015	2589	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0016	2589	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0017	2589	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0018	2589	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0019	2589	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0020	2589	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0021	2589	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0022	2589	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0023	2589	1	0	0	0	0	1	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0024	2589	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0025	2589	1	0	0	0	1	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0026	2589	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	c0027	2589	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL13RA1_chrX_118722606_118799533	1/1	c0001	1284	262	67	48	113	9	23	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0002	1284	9	1	0	7	1	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0003	1285	3	0	0	3	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0004	1284	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0005	1284	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0006	1284	1	0	0	0	1	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0007	1284	1	0	0	0	0	1	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0008	1284	1	0	1	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	c0009	1285	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA2_chrX_114998982_115022616	1/1	c0001	1143	292	76	50	127	11	26	copy fasta	IL13RA2	chrX	114998982	115022616
IL13RA2_chrX_114998982_115022616	0/0	c0002	1143	4	4	0	0	0	0	copy fasta	IL13RA2	chrX	114998982	115022616
IL13RA2_chrX_114998982_115022616	0/0	c0003	1143	2	0	2	0	0	0	copy fasta	IL13RA2	chrX	114998982	115022616
IL13RA2_chrX_114998982_115022616	0/0	c0004	1143	1	0	1	0	0	0	copy fasta	IL13RA2	chrX	114998982	115022616
IL13_chr5_132653173_132666110	0/1	c0001	441	269	68	40	120	8	32	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	1/0	c0002	441	129	15	30	71	2	10	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	c0003	441	8	7	1	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	c0004	441	3	2	1	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	c0005	441	1	0	0	1	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	c0006	441	1	1	0	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	c0007	441	1	1	0	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL15RA_chr10_5947384_5982543	0/1	c0001	804	175	65	25	58	6	20	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	1/0	c0002	804	163	10	30	92	7	23	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0003	804	48	9	10	29	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0004	804	46	2	9	27	4	4	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0005	804	7	0	2	5	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0006	804	6	6	0	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0007	804	3	0	0	3	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0008	804	2	1	1	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0009	804	1	0	0	1	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0010	804	1	0	0	0	0	1	copy fasta	IL15RA	chr10	5947384	5982543