JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL15RA_chr10_5947384_5982543	0/0	c0011	804	1	0	1	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0012	804	1	1	0	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0013	804	1	0	0	1	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	c0014	804	1	0	0	0	1	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15_chr4_141631583_141738987	1/1	c0001	489	295	85	52	104	16	36	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	c0002	489	3	1	2	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL16_chr15_81191879_81319058	0/0	c0001	3999	82	12	17	41	7	5	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/1	c0002	3999	66	9	10	33	4	9	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0003	3999	41	0	7	28	0	6	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0004	3999	33	0	5	27	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0005	3999	30	17	6	4	0	3	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0006	3999	21	18	0	2	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0007	3999	7	6	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0008	3999	5	5	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0009	3999	5	0	0	5	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0010	3999	5	4	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0011	3999	5	4	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0012	3999	4	0	0	4	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0013	3999	3	2	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0014	3999	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0015	3999	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0016	3999	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	1/0	c0017	3999	2	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0018	3999	2	0	2	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0019	3999	2	0	2	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0020	3999	2	0	0	0	0	2	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0021	3999	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0022	3999	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0023	3999	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0024	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0025	3999	1	0	0	0	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0026	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0027	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0028	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0029	3999	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0030	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0031	3999	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0032	3999	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0033	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0034	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0035	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0036	3999	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0037	3999	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	c0038	3999	1	0	0	0	1	0	copy fasta	IL16	chr15	81191879	81319058
IL17A_chr6_52181375_52195638	1/1	c0001	468	455	94	79	222	14	44	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	c0002	468	6	6	0	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	c0003	468	1	0	1	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17B_chr5_149369267_149384292	1/1	c0001	543	378	82	68	167	16	43	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	0/0	c0002	543	3	0	1	0	2	0	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	0/0	c0003	543	1	0	1	0	0	0	copy fasta	IL17B	chr5	149369267	149384292