JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL17B_chr5_149369267_149384292	0/0	c0004	543	1	1	0	0	0	0	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	0/0	c0005	559	1	0	0	0	0	1	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	0/0	c0006	543	1	1	0	0	0	0	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	0/0	c0007	543	1	0	0	1	0	0	copy fasta	IL17B	chr5	149369267	149384292
IL17C_chr16_88633572_88645468	1/1	c0001	594	410	81	71	198	13	45	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0002	594	19	4	9	0	2	4	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0003	594	4	4	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0004	594	4	4	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0005	594	3	0	2	0	1	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0006	594	2	0	2	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0007	594	1	0	0	0	0	1	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0008	594	1	0	0	1	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0009	594	1	0	0	1	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	c0010	594	1	1	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17D_chr13_20698699_20728098	1/1	c0001	609	340	88	58	135	16	41	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	c0002	609	2	0	0	0	0	2	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	c0003	609	1	0	0	1	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	c0004	609	1	1	0	0	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	c0005	609	1	0	0	0	0	1	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	c0006	571	1	1	0	0	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17F_chr6_52231681_52249500	1/1	c0001	492	369	81	57	184	11	34	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	c0002	492	46	9	6	27	1	3	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	c0003	492	6	0	3	0	1	2	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	c0004	492	5	0	4	0	1	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	c0005	492	3	0	0	3	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	c0006	492	1	0	0	1	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	c0007	492	1	0	0	1	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	c0008	492	1	0	0	0	0	1	copy fasta	IL17F	chr6	52231681	52249500
IL17RA_chr22_17080000_17120693	1/1	c0001	2601	183	17	35	89	8	32	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0002	2601	56	1	8	42	0	5	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0003	2601	47	17	13	9	4	4	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0004	2601	31	22	6	0	2	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0005	2601	28	13	11	4	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0006	2601	20	1	1	16	0	2	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0007	2601	6	0	0	6	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0008	2601	4	4	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0009	2601	4	4	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0010	2601	3	0	0	3	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0011	2601	3	3	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0012	2601	3	0	0	3	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0013	2601	2	0	2	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0014	2601	2	0	0	0	0	2	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0015	2601	2	1	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0016	2601	2	0	0	0	2	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0017	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0018	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0019	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0020	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0021	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0022	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693