JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL17RA_chr22_17080000_17120693	0/0	c0023	2601	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0024	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0025	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0026	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0027	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0028	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0029	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0030	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0031	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0032	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0033	2601	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0034	2601	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0035	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	c0036	2601	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RB_chr3_53841568_53870794	1/0	c0001	1509	107	35	25	33	7	6	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0002	1509	91	1	14	62	2	12	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0003	1509	86	38	6	34	0	8	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/1	c0004	1509	51	3	23	13	3	8	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0005	1509	40	5	4	27	2	2	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0006	1509	25	0	1	22	0	2	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0007	1509	14	0	2	5	1	6	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0008	1509	13	0	1	11	0	1	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0009	1509	9	9	0	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0010	1509	4	4	0	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0011	1509	3	1	2	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0012	1509	2	1	0	1	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0013	1509	1	0	1	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0014	1509	1	0	0	0	0	1	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0015	1509	1	1	0	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0016	1509	1	0	0	0	1	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	c0017	1509	1	0	1	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RC_chr3_9912098_9938621	0/0	c0001	2163	192	31	37	99	4	21	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/1	c0002	2163	75	41	13	10	2	8	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0003	2163	27	8	12	0	3	4	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0004	2163	17	0	7	2	5	3	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0005	2163	12	0	1	8	0	3	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0006	2163	11	0	0	11	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0007	2163	6	1	0	4	0	1	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0008	2163	3	0	1	1	0	1	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0009	2163	3	0	0	0	0	3	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0010	2163	3	3	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0011	2163	2	2	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0012	2163	2	2	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0013	2163	2	1	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0014	2163	2	0	0	2	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0015	2163	2	0	0	2	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0016	2163	2	1	0	0	1	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0017	2163	2	0	2	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0018	2163	2	0	1	0	1	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0019	2163	2	0	1	0	1	0	copy fasta	IL17RC	chr3	9912098	9938621