JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL17RC_chr3_9912098_9938621	0/0	c0020	2163	2	2	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0021	2163	1	0	0	0	0	1	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0022	2163	1	0	0	0	0	1	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0023	2163	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0024	2163	1	1	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0025	2163	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	1/0	c0026	2163	1	0	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0027	2163	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0028	2163	1	1	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0029	2163	1	0	0	0	1	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0030	2163	1	0	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0031	2163	1	0	0	0	0	1	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0032	2163	1	0	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0033	2163	1	0	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0034	2163	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0035	2163	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0036	2163	1	1	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0037	2163	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0038	2163	1	0	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0039	2163	1	1	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0040	2163	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	c0041	2163	1	0	0	0	0	1	copy fasta	IL17RC	chr3	9912098	9938621
IL17RD_chr3_57084982_57170353	0/1	c0001	2220	130	32	37	24	7	29	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0002	2220	88	5	21	53	1	8	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	1/0	c0003	2220	82	20	4	56	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0004	2220	17	10	3	2	1	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0005	2220	6	6	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0006	2220	6	6	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0007	2220	6	6	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0008	2220	5	4	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0009	2220	4	1	2	0	1	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0010	2220	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0011	2220	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0012	2220	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0013	2220	1	0	0	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0014	2220	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0015	2220	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0016	2220	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0017	2220	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0018	2220	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	c0019	2220	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17REL_chr22_49986811_50017765	0/0	c0001	1524	247	49	41	111	12	34	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/1	c0002	1524	107	16	17	59	4	10	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	1/0	c0003	1524	73	27	16	24	1	4	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0004	1524	3	0	1	2	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0005	1524	3	0	3	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0006	1524	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0007	1524	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0008	1524	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0009	1524	1	0	0	0	1	0	copy fasta	IL17REL	chr22	49986811	50017765