JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL17REL_chr22_49986811_50017765	0/0	c0010	1524	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0011	1524	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	c0012	1524	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17RE_chr3_9897848_9921397	1/0	c0001	2004	223	29	44	113	5	31	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/1	c0002	2004	110	40	31	13	11	14	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0003	2004	8	4	2	1	1	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0004	2004	7	7	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0005	2004	4	0	2	0	1	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0006	2004	4	4	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0007	2004	3	3	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0008	2004	2	2	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0009	2004	2	0	2	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0010	2004	1	0	0	1	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0011	2004	1	0	1	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0012	2004	1	1	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0013	2004	1	0	0	0	0	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0014	2004	1	0	0	0	0	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0015	2004	1	0	0	0	0	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	c0016	2004	1	0	0	0	0	1	copy fasta	IL17RE	chr3	9897848	9921397
IL18BP_chr11_71993909_72007804	1/1	c0001	585	382	80	67	177	14	42	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0002	585	8	8	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0003	585	3	3	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0004	585	3	0	0	3	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0005	585	2	2	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0006	585	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0007	585	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0008	585	1	0	1	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	c0009	585	1	1	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18R1_chr2_102350796_102403776	1/1	c0001	1626	235	53	43	95	14	28	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0002	1626	108	14	14	66	2	12	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0003	1626	11	11	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0004	1626	3	0	0	3	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0005	1626	2	2	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0006	1626	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0007	1626	1	1	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0008	1626	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0009	1626	1	1	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0010	1626	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0011	1626	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	c0012	1626	1	0	1	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18RAP_chr2_102418160_102457565	1/1	c0001	1800	384	76	65	183	14	44	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0002	1800	15	15	0	0	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0003	1800	1	1	0	0	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0004	1800	1	0	0	1	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0005	1800	1	0	0	0	1	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0006	1800	1	0	1	0	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0007	1800	1	0	0	1	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0008	1800	1	0	0	1	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	c0009	1800	1	0	0	0	1	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18_chr11_112138260_112169094	1/1	c0001	582	282	65	44	127	11	33	copy fasta	IL18	chr11	112138260	112169094