JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL18_chr11_112138260_112169094	0/0	c0002	582	78	19	28	22	3	6	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	c0003	582	1	0	0	0	0	1	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	c0004	582	1	0	0	1	0	0	copy fasta	IL18	chr11	112138260	112169094
IL19_chr1_206765773_206847981	0/1	c0001	534	193	72	41	40	9	30	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	1/0	c0002	534	172	15	29	110	3	14	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	c0003	534	1	1	0	0	0	0	copy fasta	IL19	chr1	206765773	206847981
IL1A_chr2_112768925_112789493	1/0	c0001	816	252	61	53	105	7	25	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/1	c0002	816	89	20	19	27	2	20	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	c0003	816	10	10	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	c0004	816	2	2	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	c0005	816	1	0	0	0	1	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	c0006	816	1	1	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	c0007	816	1	1	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	c0008	816	1	1	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	c0009	816	1	0	0	0	0	1	copy fasta	IL1A	chr2	112768925	112789493
IL1B_chr2_112824751_112841779	1/1	c0001	810	380	75	68	187	12	36	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	c0002	810	58	21	11	12	4	10	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	c0003	810	5	0	0	4	0	1	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	c0004	810	2	2	0	0	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	c0005	810	1	0	1	0	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	c0006	810	1	0	0	1	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	c0007	810	1	0	0	0	0	1	copy fasta	IL1B	chr2	112824751	112841779
IL1F10_chr2_113062970_113080843	0/1	c0001	459	173	55	49	28	11	29	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	1/0	c0002	459	118	26	25	57	3	6	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	c0003	459	117	4	7	96	2	8	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	c0004	459	31	11	0	20	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	c0005	459	6	0	0	6	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	c0006	459	5	0	0	5	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	c0007	459	1	0	1	0	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	c0008	459	1	0	0	0	0	1	copy fasta	IL1F10	chr2	113062970	113080843
IL1R1_chr2_102137746_102184874	1/1	c0001	1710	326	76	51	154	7	36	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0002	1710	24	0	0	14	0	10	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0003	1710	16	13	2	0	1	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0004	1710	9	3	4	0	2	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0005	1710	3	0	0	3	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0006	1710	2	0	0	2	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0007	1710	2	0	2	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0008	1710	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0009	1710	1	0	0	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0010	1710	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0011	1710	1	0	1	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0012	1710	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0013	1710	1	0	0	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0014	1710	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	c0015	1710	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R2_chr2_101986960_102033544	1/1	c0001	1197	376	66	70	175	16	47	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0002	1197	15	14	1	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0003	1197	9	7	2	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0004	1197	8	0	0	8	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0005	1197	4	0	0	4	0	0	copy fasta	IL1R2	chr2	101986960	102033544