JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL1R2_chr2_101986960_102033544	0/0	c0006	1197	3	3	0	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0007	1197	2	0	0	2	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0008	1197	1	0	1	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0009	1197	1	0	0	1	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0010	1197	1	0	0	0	0	1	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0011	1197	1	1	0	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0012	1197	1	0	1	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0013	1197	1	0	1	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0014	1197	1	0	0	1	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0015	1197	1	1	0	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	c0016	1197	1	0	0	1	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1RAPL1_chrX_28582446_29961718	0/0	c0001	2091	131	37	18	56	4	16	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	c0002	2091	1	1	0	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	c0003	2091	1	0	1	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	c0004	2090	1	0	0	1	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	c0005	2091	1	0	1	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL2_chrX_104561199_105772829	0/0	c0001	2061	118	33	18	49	5	13	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	c0002	2061	22	5	2	12	0	3	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	c0003	2060	1	0	1	0	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAP_chr3_190509085_190656514	1/1	c0001	1713	203	55	37	72	11	26	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0002	1713	38	23	8	1	1	5	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0003	1713	19	12	1	6	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0004	1713	3	0	2	0	0	1	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0005	1713	1	0	0	0	0	1	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0006	1713	1	0	0	1	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0007	1713	1	0	0	0	0	1	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0008	1713	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0009	1713	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0010	1713	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	c0011	1713	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RL1_chr2_102306563_102357037	1/1	c0001	1671	206	15	37	123	4	25	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0002	1671	62	28	7	21	2	4	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0003	1671	24	7	9	0	6	2	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0004	1671	19	3	7	7	1	1	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0005	1671	9	9	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0006	1671	5	0	0	4	0	1	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0007	1671	4	4	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0008	1671	4	4	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0009	1671	3	0	0	3	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0010	1671	3	3	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0011	1671	2	0	2	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0012	1671	1	0	0	1	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0013	1761	1	0	0	0	0	1	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0014	1671	1	1	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0015	1671	1	0	0	1	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0016	1671	1	1	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0017	1671	1	0	0	0	1	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	c0018	1671	1	1	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL2_chr2_102182023_102245002	1/1	c0001	1728	213	32	42	97	9	31	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0002	1728	68	14	15	34	2	3	copy fasta	IL1RL2	chr2	102182023	102245002