JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL1RL2_chr2_102182023_102245002	0/0	c0003	1728	48	28	5	14	1	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0004	1728	19	0	0	13	0	6	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0005	1728	9	9	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0006	1728	4	4	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0007	1728	4	4	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0008	1728	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0009	1728	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0010	1728	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0011	1728	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0012	1728	1	0	1	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0013	1728	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0014	1728	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0015	1728	1	0	1	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	c0016	1728	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RN_chr2_113122598_113139014	1/1	c0001	534	197	43	47	70	8	27	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0002	534	160	42	8	96	8	6	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0003	534	44	1	22	11	2	8	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0004	534	11	0	3	7	0	1	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0005	534	7	7	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0006	534	2	2	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0007	534	1	0	0	0	0	1	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0008	534	1	0	0	0	0	1	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0009	534	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0010	534	1	0	0	1	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0011	534	1	0	0	1	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0012	534	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	c0013	534	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL20RA_chr6_136994971_137049965	0/1	c0001	1662	195	27	54	78	11	24	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	c0002	1662	61	17	8	24	3	9	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	1/0	c0003	1662	39	32	6	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	c0004	1662	18	18	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	c0005	1662	15	0	0	4	0	11	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	c0006	1662	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	c0007	1662	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	c0008	1662	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	c0009	1662	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RB_chr3_136952983_137016085	1/1	c0001	936	312	79	55	126	10	40	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	c0002	936	2	2	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	c0003	936	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	c0004	936	1	0	1	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	c0005	936	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	c0006	936	1	0	0	1	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	c0007	936	1	0	0	1	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	c0008	936	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20_chr1_206860623_206874223	1/1	c0001	531	453	94	86	208	18	45	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	c0002	531	1	1	0	0	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	c0003	531	1	0	0	0	0	1	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	c0004	531	1	1	0	0	0	0	copy fasta	IL20	chr1	206860623	206874223
IL21R_chr16_27397174_27457042	1/1	c0001	1617	342	73	67	144	16	40	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0002	1617	13	13	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042