JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL21R_chr16_27397174_27457042	0/0	c0003	1617	5	5	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0004	1617	4	3	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0005	1617	2	1	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0006	1617	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0007	1617	1	0	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0008	1617	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0009	1617	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0010	1617	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	c0011	1617	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21_chr4_122605108_122626066	0/0	c0001	489	370	95	59	177	10	29	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	1/1	c0002	489	56	2	11	30	6	5	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	c0003	489	1	1	0	0	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	c0004	489	1	0	0	1	0	0	copy fasta	IL21	chr4	122605108	122626066
IL22RA1_chr1_24114771_24148140	0/1	c0001	1725	135	4	21	82	6	21	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0002	1725	58	1	13	29	3	12	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0003	1725	26	11	4	8	2	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0004	1725	24	9	13	1	0	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0005	1725	22	13	7	0	1	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0006	1725	17	6	8	0	2	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0007	1725	16	11	4	0	0	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0008	1725	13	1	1	10	1	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0009	1725	10	3	0	7	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0010	1725	9	5	0	0	0	4	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0011	1725	6	0	0	6	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	1/0	c0012	1725	6	4	1	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0013	1725	5	0	0	5	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0014	1725	5	3	2	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0015	1725	4	2	0	2	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0016	1725	4	2	0	0	1	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0017	1725	3	0	3	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0018	1725	3	1	0	0	0	2	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0019	1725	2	2	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0020	1725	2	1	1	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0021	1725	2	2	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0022	1725	2	0	0	2	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0023	1725	1	0	1	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0024	1725	1	0	0	0	0	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0025	1725	1	0	1	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0026	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0027	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0028	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0029	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0030	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0031	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0032	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0033	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	c0034	1725	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA2_chr6_137138820_137178644	1/1	c0001	792	408	88	80	190	11	37	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0002	792	5	1	1	1	1	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0003	792	4	0	0	0	0	4	copy fasta	IL22RA2	chr6	137138820	137178644