JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL22RA2_chr6_137138820_137178644	0/0	c0004	792	3	0	0	3	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0005	792	2	2	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0006	792	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0007	792	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0008	792	1	0	0	0	0	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0009	792	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0010	792	1	0	0	0	0	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	c0011	792	1	0	1	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22_chr12_68243242_68258604	1/1	c0001	540	442	91	80	204	18	47	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	c0002	540	3	3	0	0	0	0	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	c0003	540	1	0	0	0	0	1	copy fasta	IL22	chr12	68243242	68258604
IL23A_chr12_56333884_56345410	1/1	c0001	570	330	81	58	135	14	40	copy fasta	IL23A	chr12	56333884	56345410
IL23A_chr12_56333884_56345410	0/0	c0002	570	18	0	4	12	2	0	copy fasta	IL23A	chr12	56333884	56345410
IL23A_chr12_56333884_56345410	0/0	c0003	570	1	0	0	1	0	0	copy fasta	IL23A	chr12	56333884	56345410
IL23A_chr12_56333884_56345410	0/0	c0004	570	1	1	0	0	0	0	copy fasta	IL23A	chr12	56333884	56345410
IL23R_chr1_67161454_67264979	0/0	c0001	1890	119	28	20	60	3	8	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0002	1890	109	32	20	42	5	10	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0003	1890	25	10	5	6	4	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0004	1890	11	4	3	1	1	2	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0005	1890	8	0	0	7	1	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0006	1890	4	0	3	0	1	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0007	1890	3	0	3	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0008	1890	2	1	1	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0009	1890	2	0	1	0	1	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0010	1890	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0011	1890	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0012	1890	1	1	0	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0013	1890	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0014	1890	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0015	1890	1	1	0	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	c0016	1890	1	1	0	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL24_chr1_206892443_206909139	1/1	c0001	621	224	53	36	105	4	24	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	c0002	621	137	24	32	63	8	10	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	c0003	621	9	9	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	c0004	621	7	7	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	c0005	621	4	0	0	4	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	c0006	621	1	1	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL25_chr14_23367809_23381403	1/1	c0001	486	313	55	63	144	16	33	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	c0002	486	109	41	14	42	2	10	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	c0003	486	1	0	1	0	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	c0004	486	1	0	0	0	0	1	copy fasta	IL25	chr14	23367809	23381403
IL26_chr12_68196349_68230810	1/1	c0001	516	390	92	74	162	16	44	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	c0002	516	8	8	0	0	0	0	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	c0003	516	2	0	1	1	0	0	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	c0004	516	1	0	1	0	0	0	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	c0005	516	1	0	0	1	0	0	copy fasta	IL26	chr12	68196349	68230810
IL27RA_chr19_14026762_14058218	1/1	c0001	1911	262	59	53	100	15	33	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0002	1911	59	1	9	46	1	2	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0003	1911	44	8	12	17	2	5	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0004	1911	11	7	1	1	0	2	copy fasta	IL27RA	chr19	14026762	14058218