JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL27RA_chr19_14026762_14058218	0/0	c0005	1911	5	0	0	5	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0006	1911	4	4	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0007	1911	2	0	0	0	0	2	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0008	1911	2	2	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0009	1911	2	0	0	0	0	2	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0010	1911	2	2	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0011	1911	1	0	1	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0012	1911	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0013	1911	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0014	1911	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0015	1911	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0016	1911	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0017	1911	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0018	1911	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	c0019	1911	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27_chr16_28494362_28511834	1/1	c0001	732	294	86	42	120	6	38	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	c0002	732	58	3	21	25	5	4	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	c0003	732	33	4	3	21	1	4	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	c0004	732	7	0	4	0	2	1	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	c0005	732	1	1	0	0	0	0	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	c0006	732	1	0	0	0	0	1	copy fasta	IL27	chr16	28494362	28511834
IL2RA_chr10_6005689_6067367	1/1	c0001	819	341	56	60	171	18	34	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	c0002	819	29	5	8	15	0	1	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	c0003	819	26	21	2	0	0	3	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	c0004	819	10	10	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	c0005	819	4	0	0	0	0	4	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	c0006	819	2	0	0	2	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	c0007	819	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	c0008	819	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RB_chr22_37120843_37154916	1/1	c0001	1656	230	37	41	116	8	26	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0002	1656	98	34	7	47	2	8	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0003	1656	73	2	22	37	6	6	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0004	1656	11	1	3	2	0	5	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0005	1656	7	7	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0006	1656	5	5	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0007	1656	4	3	1	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0008	1656	4	4	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0009	1656	3	0	0	3	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0010	1656	3	0	0	3	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0011	1656	3	1	2	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0012	1656	2	1	1	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0013	1656	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0014	1656	1	0	1	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0015	1656	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0016	1656	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0017	1656	1	0	0	0	0	1	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0018	1656	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0019	1656	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0020	1656	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0021	1656	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916