JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL2RB_chr22_37120843_37154916	0/0	c0022	1656	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	c0023	1656	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RG_chrX_71102404_71116577	1/1	c0001	1110	277	78	50	114	5	28	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	c0002	1111	2	0	0	1	0	1	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	c0003	1110	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	c0004	1109	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	c0005	1110	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	c0006	1110	1	0	0	0	0	1	copy fasta	IL2RG	chrX	71102404	71116577
IL2_chr4_122446470_122461725	1/0	c0001	462	283	92	46	104	12	28	copy fasta	IL2	chr4	122446470	122461725
IL2_chr4_122446470_122461725	0/1	c0002	462	151	4	24	108	6	8	copy fasta	IL2	chr4	122446470	122461725
IL31RA_chr5_55846357_55927850	1/0	c0001	2295	95	11	12	58	5	8	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0002	2295	87	21	12	40	4	10	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/1	c0003	2295	73	26	19	17	2	8	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0004	2295	20	18	2	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0005	2295	12	1	5	0	2	4	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0006	2295	8	2	3	2	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0007	2295	7	0	4	1	0	2	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0008	2295	4	0	2	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0009	2295	3	1	0	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0010	2295	2	0	2	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0011	2295	2	0	1	0	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0012	2295	2	2	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0013	2295	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0014	2295	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0015	2295	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0016	2295	1	0	0	0	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0017	2295	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0018	2295	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	c0019	2307	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31_chr12_122167029_122179221	1/1	c0001	495	274	70	46	122	10	24	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	c0002	495	60	3	24	20	4	9	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	c0003	495	32	22	3	2	0	5	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	c0004	495	1	0	1	0	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	c0005	495	1	1	0	0	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	c0006	495	1	0	0	1	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	c0007	495	1	0	0	1	0	0	copy fasta	IL31	chr12	122167029	122179221
IL32_chr16_3060640_3074530	1/1	c0001	567	444	94	78	208	17	45	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0002	567	3	0	0	3	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0003	567	3	0	2	0	1	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0004	567	2	1	0	0	0	1	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0005	567	2	0	0	0	0	2	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0006	567	1	1	0	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0007	567	1	0	0	1	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0008	567	1	0	1	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	c0009	567	1	0	1	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL33_chr9_6210807_6262983	1/1	c0001	813	204	54	41	68	14	25	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	c0002	813	148	28	33	69	4	14	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	c0003	813	6	6	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	c0004	813	1	0	0	0	0	1	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	c0005	813	1	0	0	1	0	0	copy fasta	IL33	chr9	6210807	6262983