JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL33_chr9_6210807_6262983	0/0	c0006	813	1	1	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	c0007	813	1	1	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL34_chr16_70641559_70665682	0/0	c0001	729	294	72	50	129	9	34	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	1/1	c0002	729	100	0	29	54	6	9	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0003	729	17	2	1	8	2	4	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0004	729	6	6	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0005	729	5	4	1	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0006	729	4	0	0	4	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0007	729	3	2	1	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0008	729	2	0	0	2	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0009	729	2	2	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0010	729	1	0	0	0	1	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0011	729	1	0	0	0	0	1	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0012	729	1	0	0	1	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0013	729	1	0	0	1	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	c0014	729	1	0	0	1	0	0	copy fasta	IL34	chr16	70641559	70665682
IL36A_chr2_113000459_113013044	0/1	c0001	477	358	65	61	181	10	40	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	1/0	c0002	477	44	23	12	2	4	2	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	c0003	477	7	0	0	7	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	c0004	477	5	0	3	0	0	2	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	c0005	477	4	4	0	0	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	c0006	477	2	2	0	0	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36B_chr2_113017089_113057867	1/1	c0001	495	391	87	74	166	18	44	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	c0002	495	5	5	0	0	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	c0003	495	4	0	0	4	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	c0004	495	3	0	0	2	0	1	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	c0005	495	1	0	0	0	0	1	copy fasta	IL36B	chr2	113017089	113057867
IL36G_chr2_112973006_112990658	1/1	c0001	510	399	79	63	195	16	44	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	c0002	510	16	15	1	0	0	0	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	c0003	510	5	0	0	5	0	0	copy fasta	IL36G	chr2	112973006	112990658
IL36RN_chr2_113054198_113069744	1/1	c0001	468	423	82	77	198	18	46	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0002	468	9	0	0	9	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0003	468	6	0	0	6	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0004	468	5	5	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0005	468	2	1	0	1	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0006	468	2	2	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0007	468	1	1	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0008	468	1	0	1	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	c0009	468	1	1	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL37_chr2_112906165_112923882	0/0	c0001	657	235	10	52	141	5	27	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	1/0	c0002	657	123	59	8	39	3	13	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/1	c0003	657	24	19	2	0	2	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	c0004	657	12	0	0	12	0	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	c0005	657	6	6	0	0	0	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	c0006	657	5	5	0	0	0	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	c0007	657	1	1	0	0	0	0	copy fasta	IL37	chr2	112906165	112923882
IL3RA_chrX_1331785_1387689	1/1	c0001	1137	88	30	14	30	2	10	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0002	1137	7	0	5	1	1	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0003	1137	3	0	1	0	2	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0004	1135	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689