JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL3RA_chrX_1331785_1387689	0/0	c0005	1136	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0006	1138	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0007	1136	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0008	1136	1	0	1	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0009	1140	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0010	1138	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0011	1136	1	0	1	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0012	1137	1	0	0	0	0	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0013	1136	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0014	1137	1	0	0	0	0	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0015	1137	1	0	0	0	0	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0016	1138	1	0	0	0	0	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0017	1139	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0018	1136	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0019	1137	1	0	1	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	c0020	1137	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3_chr5_132055655_132068204	1/1	c0001	459	225	46	47	98	11	21	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	c0002	459	216	40	33	118	4	21	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	c0003	459	3	3	0	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	c0004	459	2	2	0	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	c0005	459	2	2	0	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	c0006	459	1	0	0	0	1	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	c0007	459	1	1	0	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL4I1_chr19_49884654_49901887	1/1	c0001	1704	340	80	57	145	14	42	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0002	1704	62	6	17	33	0	6	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0003	1704	6	0	0	6	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0004	1704	4	3	1	0	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0005	1704	3	3	0	0	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0006	1704	2	0	0	2	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0007	1704	2	0	1	0	0	1	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0008	1704	2	2	0	0	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0009	1704	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0010	1704	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0011	1704	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0012	1704	1	0	0	0	0	1	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0013	1704	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0014	1704	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	c0015	1698	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4R_chr16_27308974_27369778	0/0	c0001	2478	93	11	8	60	4	10	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	1/0	c0002	2478	81	8	23	31	6	12	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0003	2478	28	9	5	13	0	1	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0004	2478	18	0	3	9	0	6	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0005	2478	12	0	9	3	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0006	2478	10	10	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0007	2478	8	0	0	8	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0008	2478	7	2	3	0	2	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0009	2478	6	6	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0010	2478	5	5	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0011	2478	4	4	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0012	2478	4	4	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778