JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL4R_chr16_27308974_27369778	0/1	c0013	2478	4	1	2	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0014	2478	3	0	1	0	2	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0015	2478	3	1	0	1	0	1	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0016	2478	3	2	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0017	2478	3	3	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0018	2478	3	2	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0019	2478	3	0	0	0	0	3	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0020	2478	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0021	2478	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0022	2478	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0023	2478	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0024	2478	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0025	2478	1	0	0	0	0	1	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0026	2478	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0027	2478	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0028	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0029	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0030	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0031	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0032	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0033	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0034	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0035	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0036	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0037	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0038	2478	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0039	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0040	2478	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0041	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0042	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0043	2478	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0044	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0045	2478	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0046	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0047	2478	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	c0048	2478	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4_chr5_132668989_132687678	1/1	c0001	462	395	71	76	198	10	38	copy fasta	IL4	chr5	132668989	132687678
IL4_chr5_132668989_132687678	0/0	c0002	462	22	18	4	0	0	0	copy fasta	IL4	chr5	132668989	132687678
IL4_chr5_132668989_132687678	0/0	c0003	462	2	0	0	2	0	0	copy fasta	IL4	chr5	132668989	132687678
IL4_chr5_132668989_132687678	0/0	c0004	462	2	0	0	2	0	0	copy fasta	IL4	chr5	132668989	132687678
IL4_chr5_132668989_132687678	0/0	c0005	462	1	1	0	0	0	0	copy fasta	IL4	chr5	132668989	132687678
IL5RA_chr3_3061324_3115374	1/1	c0001	1263	287	61	49	143	11	21	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0002	1263	157	31	32	59	6	29	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0003	1263	2	0	0	2	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0004	1263	1	0	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0005	1263	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0006	1263	1	0	0	1	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0008	1263	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0009	1263	1	0	0	1	0	0	copy fasta	IL5RA	chr3	3061324	3115374