JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL5RA_chr3_3061324_3115374	0/0	c0010	1263	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	c0011	1263	1	0	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5_chr5_132536445_132548522	1/1	c0001	405	415	85	72	200	18	38	copy fasta	IL5	chr5	132536445	132548522
IL5_chr5_132536445_132548522	0/0	c0002	405	15	13	2	0	0	0	copy fasta	IL5	chr5	132536445	132548522
IL5_chr5_132536445_132548522	0/0	c0003	405	4	0	0	4	0	0	copy fasta	IL5	chr5	132536445	132548522
IL6R_chr1_154400343_154474450	1/0	c0001	1407	161	40	23	71	5	21	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/1	c0002	1407	105	8	32	50	4	10	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0003	1407	46	5	8	21	1	11	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0004	1407	14	14	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0005	1407	12	11	1	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0006	1407	3	3	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0007	1407	2	0	0	2	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0008	1407	1	0	0	1	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0009	1407	1	0	0	1	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	c0010	1407	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6ST_chr5_55930095_55999963	1/1	c0001	2757	199	32	50	73	11	31	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0002	2757	36	17	9	8	2	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0003	2757	10	9	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0004	2757	10	8	0	0	2	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0005	2757	8	8	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0006	2757	4	4	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0007	2757	4	4	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0008	2757	3	0	0	3	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0009	2757	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0010	2757	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0011	2757	1	0	0	0	1	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	c0012	2757	1	0	0	0	0	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6_chr7_22722200_22736998	1/1	c0001	639	361	68	62	171	14	44	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	c0002	639	32	19	10	0	2	1	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	c0003	639	12	1	4	6	0	1	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	c0004	639	8	8	0	0	0	0	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	c0005	639	4	4	0	0	0	0	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	c0006	639	1	0	0	1	0	0	copy fasta	IL6	chr7	22722200	22736998
IL7R_chr5_35851891_35884603	1/0	c0001	1380	120	7	24	73	2	13	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0002	1380	71	6	14	37	6	8	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/1	c0003	1380	69	26	20	10	4	8	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0004	1380	60	11	11	33	1	4	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0005	1380	37	19	1	14	0	3	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0006	1380	18	17	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0007	1380	10	0	1	9	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0008	1380	6	0	0	6	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0009	1380	5	5	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0010	1380	3	0	0	0	0	3	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0011	1380	2	2	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0012	1380	1	0	0	0	1	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0013	1380	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0014	1380	1	0	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0015	1380	1	0	0	0	0	1	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0016	1380	1	0	0	0	0	1	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0017	1380	1	0	0	0	0	1	copy fasta	IL7R	chr5	35851891	35884603