JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IL7R_chr5_35851891_35884603	0/0	c0018	1380	1	0	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0019	1380	1	0	0	1	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	c0020	1380	1	0	0	1	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7_chr8_78727772_78810463	1/1	c0001	534	261	84	48	94	14	19	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	c0002	534	3	0	0	0	0	3	copy fasta	IL7	chr8	78727772	78810463
IL9R_chrX_155992696_156015817	0/0	c0001	1569	76	25	8	37	0	6	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	1/1	c0002	1566	69	8	27	20	6	6	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0003	1569	21	1	0	19	0	1	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0004	1566	8	0	2	2	2	2	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0005	1563	5	5	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0006	1569	5	5	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0007	1563	4	4	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0008	1569	3	0	0	3	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0009	1563	3	3	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0010	1569	3	1	0	2	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0011	1566	2	0	0	0	0	2	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0012	1569	2	0	0	2	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0013	1568	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0014	1566	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0015	1566	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0016	1563	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0017	1565	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0018	1572	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0019	1566	1	0	1	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0020	1569	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0021	1569	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0022	1569	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0023	1570	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0024	1569	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0025	1569	1	0	0	0	0	1	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0026	1566	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0027	1563	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0028	1563	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0029	1569	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0030	1572	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	c0031	1572	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9_chr5_135887246_135900841	1/1	c0001	435	417	73	74	213	15	40	copy fasta	IL9	chr5	135887246	135900841
IL9_chr5_135887246_135900841	0/0	c0002	435	27	14	6	0	1	6	copy fasta	IL9	chr5	135887246	135900841
IL9_chr5_135887246_135900841	0/0	c0003	435	4	0	0	4	0	0	copy fasta	IL9	chr5	135887246	135900841
IL9_chr5_135887246_135900841	0/0	c0004	435	2	0	0	2	0	0	copy fasta	IL9	chr5	135887246	135900841
IL9_chr5_135887246_135900841	0/0	c0005	435	1	1	0	0	0	0	copy fasta	IL9	chr5	135887246	135900841
IL9_chr5_135887246_135900841	0/0	c0006	435	1	0	0	1	0	0	copy fasta	IL9	chr5	135887246	135900841
ILDR1_chr3_121982323_122027247	0/1	c0001	1641	160	26	29	87	3	14	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0002	1641	102	24	19	35	4	20	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	1/0	c0003	1641	63	7	23	13	9	10	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0004	1641	8	7	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0005	1641	8	8	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0006	1641	7	7	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0007	1641	4	3	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0008	1641	3	0	0	3	0	0	copy fasta	ILDR1	chr3	121982323	122027247