JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ILDR1_chr3_121982323_122027247	0/0	c0009	1641	2	0	2	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0010	1641	2	2	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0011	1641	2	0	2	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0012	1641	2	0	0	2	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0013	1641	2	2	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0014	1641	1	1	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0015	1641	1	0	0	0	0	1	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0016	1641	1	1	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0017	1641	1	0	0	0	0	1	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0018	1641	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0019	1641	1	0	0	1	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0020	1641	1	1	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0021	1641	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0022	1641	1	0	0	1	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0023	1641	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0024	1641	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0025	1641	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	c0026	1641	1	1	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR2_chr1_166903187_166980540	0/0	c0001	1920	312	82	50	137	8	35	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0002	1920	23	7	12	0	3	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0003	1920	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0004	1920	1	0	0	0	1	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0005	1920	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0006	1920	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0007	1920	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0008	1920	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	c0009	1920	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILF2_chr1_153656788_153675993	1/1	c0001	1173	378	91	63	164	16	42	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	c0002	1173	6	6	0	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	c0003	1173	2	0	0	2	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	c0004	1173	1	0	1	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	c0005	1173	1	1	0	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF3_chr19_10649346_10697400	0/1	c0001	2697	202	41	36	94	9	21	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	1/0	c0002	2697	127	19	23	62	5	17	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0003	2697	4	4	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0004	2697	2	0	0	0	2	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0005	2697	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0006	2697	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0007	2697	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0008	2697	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0009	2697	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0010	2697	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0011	2697	1	0	1	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0012	2697	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0013	2697	1	0	1	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0014	2697	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	c0015	2697	1	0	1	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILKAP_chr2_238165402_238208695	1/1	c0001	1179	400	87	68	192	11	40	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	c0002	1179	9	0	1	5	1	2	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	c0003	1179	5	5	0	0	0	0	copy fasta	ILKAP	chr2	238165402	238208695